Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs13410909 chr2:118535779 T/C 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs13413450 chr2:24272396 G/T 0.000118 177 25.28 26.57 17.43 KM Plot
PCPG rs13418169 chr2:24331551 C/A 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs13421574 chr2:24295715 G/T 0.000113 177 25.4 27.52 17.43 KM Plot
PCPG rs13425827 chr2:118549296 C/G 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs13427175 chr2:176197900 G/A 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs13428912 chr2:24327965 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs13437740 chr7:23732024 G/C 0.000385 176 25.47 24.88 NA KM Plot
PCPG rs13438815 chr8:11305681 C/T 7.5E-6 178 25.87 19.3 14.15 KM Plot
PCPG rs13439101 chr8:11304486 C/A 7.5E-6 178 25.87 19.3 14.15 KM Plot
PCPG rs1344790 chr3:136651964 A/C 0.000398 178 15 27.2 23.83 KM Plot
PCPG rs134872 chr22:42653038 T/C 0.000388 171 13.27 30.93 20.2 KM Plot
PCPG rs1356035 chr3:80573814 G/A 6.66E-5 177 19.53 24.03 27.2 KM Plot
PCPG rs1370204 chr3:80622589 T/C 2.34E-5 175 19.87 23.53 25.87 KM Plot
PCPG rs1371435 chr2:209962954 A/G 1.11E-9 178 26.57 24.3 19.87 KM Plot